NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1108683

Scaffold Ga0207193_1108683


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1108683 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2489
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_11086831F002060N/AMNINYASIIIAISAAILSGMGTAIIAGLRDNKKEKIRQNEREQDHLKMEIKDLKISLYKIERDLTEWKDKYYNAIQELISVKAELEETMLKLSFID
Ga0207193_11086832F000671GAGGMEKILCYSCNKSKNKLDVRKSSLLPINLLVCETCNSAKLEPRWVVILAGRSSGPDHVKEFIIKRRYLGNEITASELLI
Ga0207193_11086833F011938GGAGGVKEYYDVTHIVFIHSEQCHGTVESLGAYASTVKYKKEDGTEYSELMENEDFTIVDEIVFKHIEESN
Ga0207193_11086834F000473GAGGMFIDKSADKQREHFKYGINHWTGEPNKPVFYTEEMKKAVHNLKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVSKVKKLIESYGVRCELEGKPSERVL
Ga0207193_11086836F013878AGGAMLNLTELGVEVFIKKAKNVTPYWDNYDLIIWRKDSGGFTNIKGMFKENAWGIAERIAITDNGIWKLPTKYVRNFK
Ga0207193_11086838F003582N/AMHTYSVKIEIDAEVEAFSSEDAVDYANDIFGVDDEVKNVKVVSVKEK
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