NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1108279

Scaffold Ga0207193_1108279


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1108279 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2496
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F005558Metagenome396Y
F018135Metagenome236Y
F027417Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_110827912F018135GGAGMTVTKVKSNGAYVLSDLVGTGAGEYLFTRTYYGYTLAQAKAQFRIELKEAK
Ga0207193_11082793F001477AGGAGGMSREFITKAHYPKESNLYTIHPKKSELILLYEVVDESGRAEWGGANPEQAIQWLTFAPAEARLLVSAWDSDEEDAHLVGQTIDITEIIQQARKVGR
Ga0207193_11082794F000821GGAGGVNREYLEAKVDLCLNQAEIDLQQEEIARAIANLRRANSALSQLFGFEEEGNE
Ga0207193_11082795F003212AGGAGMKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIESHWKGRVLPTNEGESNE
Ga0207193_11082796F027417AGGMNYDYRVTFVTDYLTITTNVSLDLNDTTGNLSDEAYGRAAVKGMNNIEDEIGKIDETIINDITVTLILDDEEIELNEG
Ga0207193_11082799F005558GAGGMDNQTMSWSELAELTHATQVERFNFCMCEDNEGQENPYADCPTEEGK
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