NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1088359

Scaffold Ga0207193_1088359


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1088359 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2901
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F041648Metagenome / Metatranscriptome159Y
F052398Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_10883592F052398N/AMNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINEVVKNILPLYGIDASPERLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKKKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKK
Ga0207193_10883596F021732N/AMNITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGWIFEPHDIDLSLYPVINERNLMPLVDENEMDWVIIKI
Ga0207193_10883597F041648N/AMEALANTLTDNALTRYYELRIKYLEGEQERLRNEARADYLITLDFWIYAQRIIEVYIMFHKDANHEHYLDMIKTILKNLEAHDEKALDTAINRLRLEVITRCNEAIIKCQTIRDNK
Ga0207193_10883598F014956GAGMNIQDFVINVTTTVCPSHIVEPNHLRKWWRQRGVGELEKYFVSGKAIHYNDEIDWNAISDHKKSLWYDSQNFQINMGHEYSKRTS
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