Scaffold Ga0207193_1086720

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1086720
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2942
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F078705	Metagenome	116	N
F093349	Metagenome	106	N
F093847	Metagenome	106	N
F095470	Metagenome	105	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10867203	F095470	GGA	MKKVIWVASESENWHLYRHFEPIIEDVTGFNFKEDLCSETVKYMAKRFSETPYQRRFRSIFSIYQDDYKALVEKFIKQAENNAKIEVK
Ga0207193_10867204	F093349	GAG	MSTVVKYIFKRYTSGMEIFEALLLMADIKKSAHNKNHSLENFTVDSQVKFSSKCKICKKTVTVDLEAELPVSGEVLFIDCQKPERKKKIQISS
Ga0207193_10867206	F001561	N/A	MKRKQKMQTREQKIKLLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKNGDKIRAIGNCRFNLKRFPNDPYAQSKLKELTK
Ga0207193_10867207	F103253	N/A	MEEKVWIYLSKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNILTGFAKNVDIPENLKLAIFKNYTFDEEETENANS
Ga0207193_10867208	F078705	N/A	MYIAVDAIASEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYVSGNFNLITIEKLRKYVKSKRDMVK
Ga0207193_10867209	F093847	N/A	QSQKDSTLTINLRKTFARVVYYIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSFDIIGTVYIGGIYLTAHNKDLISL