Scaffold Ga0207193_1072694

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1072694
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3347
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F047485	Metagenome	149	N
F056318	Metagenome	137	Y
F067414	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_107269410	F047485	AGGAG	MQGLDNHFSALWVANERREAEGTPTAKYTITVAVEGFVQIDVEATSRSKAVDQAMEIFNDSSINIVVTEKSVADVEKWT
Ga0207193_10726944	F034068	AGGAG	MQIKAIKRERDIDYDRLYQAYGGLIEWIGKNEVDGQETLGLLVKAAIALAVTNNLPKEDILEVVSVTYDMERSMRPTSNEVH
Ga0207193_10726945	F056318	GGAG	MFKHITPYPWTVGRRGIQTLSSVWGYENEYGIPIVAECHGKNTPMATQRANARLIAIAPQMYEIIQKMQSEDAKALVRYMEKETDYADQGN
Ga0207193_10726948	F067414	AGGAGG	MDDQERIVYLRSALKNLTESADRYIEDGSWIEHLSLDVEFAKGVLKSTRIKKESKNDRKTMEL