Scaffold Ga0207193_1057014

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1057014
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3992
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007468	Metagenome / Metatranscriptome	350	Y
F013184	Metagenome / Metatranscriptome	273	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_105701410	F007468	GGAGG	LTTQTKSSKFIEYMKIHLISLNQDLEADYNVQSKINIQGQIMATEHLLSVATDIMNNSNERYE
Ga0207193_105701411	F001460	GGAG	MLGYTESDLNRMINAVHDVKLFYLRSPSDLMNKDPLVKDLEDAVSFMQGLWAEGYFDHTN
Ga0207193_105701412	F013184	GAGG	LNSYNFVIKLAGSVLAKNEKEAHAKINAHLDDLGDVDSSRYDLGWPEVSWDMEYDLC
Ga0207193_105701413	F002387	AGGAGG	MASFLEDVNQMVIDAVYSDIAEQLLEQWINNNLDEGQYYADKQFAEMSGDKFIYAEFNKFYELKEGDEDYLEFL
Ga0207193_10570143	F003603	AGGCGG	MKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTLDRIVEVVAWIIEKQAERYRREVSNNGTVSEGLIISNMLDQMIDKIKVTNDLKSVKLPITPKERGEFIKSLPETKEQNYRYSWLHDTDNRTKVTIDHPFI
Ga0207193_10570144	F000852	AGGA	MATKREYLKSKGITVGARGRFSSAAKQALQEATTNGVTFEAEKPTPKK
Ga0207193_10570145	F034924	GAGG	LPIYRVFGTKYQNYYTIVSAADEYQAAEIANLRPSTDWDSIPTDDEIEATDVFLDEDTEIDLQVNM
Ga0207193_10570146	F001019	AGGGGG	MTHYEPSLEILEVAYDCSPGGIRTFEVYDKGDNMVIMDMPIYETDSLTKAVQYCYNLDKDFIVRTYAEWEMRELIADI
Ga0207193_10570147	F000441	AGGAGG	MKMSDPYINDQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMEGDEGENDSL
Ga0207193_10570149	F000263	AGG	MTISDDMFTDKESLVLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIEREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARTL