Scaffold Ga0207193_1052959

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1052959
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4212
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013760	Metagenome / Metatranscriptome	268	Y
F028165	Metagenome / Metatranscriptome	192	N
F100728	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10529591	F100728	N/A	KVPGSSQGLLDGCDIVIHTGNGWHGYVMLPAVANCRNTKDRTAIEAKIRSWQNSIILGTDPVGNVDRIMRIPGTLNWKEPDNPKAVTLLKGGAMRPTHKESLIVRHLKDGRLDALLASAKQGQLGRAVPRIRHASGRITDLLDVFFLEAEEACQAFESNAAWEYRLDIVRADLPEIMEYYFGS
Ga0207193_10529596	F028165	AGGAG	MALAFSLEEKKERIRQAMEVYSTTGSWSKADNIVRRQSVEKWVRDPEILEYAQRLGYQQMCTDAVATFAPTTAHYTSRMVFSAALIHMKESRYVARDGARIQYAIQHGQLVMFKLDGAGTRHHAGPAYFRGADILANDWMIIR
Ga0207193_10529598	F013760	GGAG	MGRNQMITFAIGALVGAGCVVVWSEMYTRWLYKDVKKRAKAQGITDQQMKDALLWAATENIEDSLGK