Scaffold Ga0207193_1047142

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1047142
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4587
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013618	Metagenome	269	N
F016265	Metagenome / Metatranscriptome	248	Y
F017290	Metagenome / Metatranscriptome	241	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10471421	F016265	N/A	YNGTRVVLADNLGQYTFSQSITNADLLETNVIPSGVATLSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYMDPESMCQ
Ga0207193_10471423	F017290	AGGAG	MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTMDGEAYKTTNISGTFQLDMLADWGKANSVCEALWAAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS
Ga0207193_10471427	F013618	GAG	MSVFNPEYKLSINGVEYTDVAISDIAHQAGREDIYAQPTPSYIQIALLALNNENYNFQVNDGIALQVKDSSNVFRTLFGGNITDITTEVASASSLAETFTYTIIALGSLAKLPKVIYDGTLARDDDGDQMFELLSDLFLNNWNEVPAAETWAGYDPIITWANAENLGLGEIDRPGVYEITNRGASPDTVYNIASLIADSAFGVLYEDNEGRIGYADALHRQNYLANNGYTEISANTAFGAGLKVLTRGADVRNDVFLNYGNNFGSQVSAIDLDSIETFGYRGETINTVLHDATDAQDVADRFISLRSFPRPLFDSITFPLTNSAIDDADRDALLGIFVGQPMRITDLPVQIAPTLQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVAVQWEQVSASEKWNTLNATLTWEKAIGAVA