Scaffold Ga0207193_1042527

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1042527
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4938
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F010684	Metagenome / Metatranscriptome	300	Y
F020167	Metagenome	225	Y
F023106	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_104252712	F010684	AGG	MAEFKVEVIFEPTGDYMTFRYEAEAEDEEALLNEVLSQLSIVSFKEQE
Ga0207193_104252714	F023106	GGA	MRISRRITEEEKVANKIGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAYNNL
Ga0207193_10425274	F002935	AGGA	MRERTTGYMGNVLDGKKLAKIANDIYALQYPDFSKCKVDDLLLIELEEKNSYGDPKYAVICSEGVGWQQDTYGCLEIPTNIGQGGYYNGRVFISVEVVKSCQTIFKKDISEYIRTFGDRLDGNCDLWQSKMSVVPSTILA
Ga0207193_10425275	F020167	N/A	MTQTMRTIDELVNEMYMDNEQHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEN