Scaffold Ga0207193_1042394

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1042394
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4949
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F018135	Metagenome	236	Y
F038999	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10423941	F038999	GGAG	MTHQGDHFQGCTIECKPAKLSFPCSCNGCRNYPTRPAEVWHESQIASKAQGYFFTPDTMRFFKSRIADFKPVGISPRGVDSLMVIVSNKRDDDPRYYEIVTLCPYGELGREWSTDSDGSPITSYESLSKARKSARWNCTISPQLCECHGCQLDKAGR
Ga0207193_104239411	F001477	GAGG	MSNIYTIHPKKSELILFYEVVTQEGENEWGGASAEHCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDITEIIQQAREVGL
Ga0207193_104239412	F003863	GGAGG	MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWVINTDSRLTVGIHTRANNTPAFGDPADAGADEGYDGGEA
Ga0207193_10423945	F018135	AGGCGG	MTVERVRHSGAYVLSDLVGEGGGSYLFTRTYYGYTLKQAKAQFRLALESEGE
Ga0207193_10423948	F003212	GGAG	MKDKWLVTIEIDTYDGDPRWWDWDYIFTSGDDVKVISSDFKGRVLPTNEGENE