Basic Information | |
---|---|
Taxon OID | 3300020048 Open in IMG/M |
Scaffold ID | Ga0207193_1036173 Open in IMG/M |
Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Minnesota - Twin Cities |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5539 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Manganika, Minnesota, USA | |||||||
Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001872 | Metagenome / Metatranscriptome | 623 | Y |
F002794 | Metagenome / Metatranscriptome | 529 | Y |
F006139 | Metagenome / Metatranscriptome | 380 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0207193_10361734 | F006139 | N/A | MAVEVVVSVVGGCFALLVALIGKIGYENKKDHGQVHQTLGRIEEKIDNHVENHR |
Ga0207193_10361736 | F001872 | AGG | VTVAKAKPGVEGARDYIGNADGASPGPRAGMDEWIRQAIAASNGALWNNGSWGQRDVKGKPGTMSVHATGRAVDLSYRKAEKHPKANRKDALAFINTVVANANDLGVQMIIDYFPKEFGRAWRCDRQAWLKYTKPTVSGAPGGDWFHIEISPQAADSVIWVKAAFLKVFGEIPPKP |
Ga0207193_10361739 | F002794 | GGAG | MSEGVAWNQGELTEETRRMVLEQAMQTNHTMAMFGLIDEIMAGSTNPHASIIRRLRAMKNSLSLEDPMPLYDVTTLDLAIKALQAHS |
⦗Top⦘ |