Scaffold Ga0207193_1031556

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1031556
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6098
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F004583	Metagenome / Metatranscriptome	432	Y
F059958	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_103155611	F059958	AGGAG	MATKTSLTTMDAVKKLMEFNKLYNNIVTVTVNEKNTLTQAEWALEDAKFEILRSADVKELGSNAEQREAKLSGMLAEQVKDVRTATLRYELAKAEEQKCRANLEFAKHLVRASEILAEA
Ga0207193_10315563	F003750	GGAGG	MTLDMVNRLMYLVFWGGGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMFSGGLAGVGLLCGIWMVMVQSSRELQGKKQYQYVVL
Ga0207193_10315564	F004476	AGAAG	MLFSKNGFKSVDTTEAFVKEALEFGNKDVVLSVVHSDGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKTLTDNNISSLHLTSAIYAYLSEAFKVADMFRSTTRQSTDYAN
Ga0207193_10315567	F004583	AGGAG	MKATRNSDRLREILFATRHQIVSLKDIQMDMMRHDAKVANQVATQISALEEVYKHQLSLVALAENVEPKRNGWFSGHIKTKEDRLANIMD