Scaffold Ga0207193_1031058

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1031058
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6168
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F005558	Metagenome	396	Y
F017972	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_103105810	F000821	AGGAGG	MNKEYLEAKLHLCLDQAEKNIKEEEIAMAIKNLERANSALSRLFGLEEESENE
Ga0207193_103105811	F005558	AGGGGG	MSDSISWGELAELTHATQVERFNFCTCEVDEYRPYDDCPKEEDNE
Ga0207193_103105812	F003212	AGGAG	MKDKWTITLEIETYDGDPRWWDWSLFFGEEDEWKIVSSEFNGRVLKEEGESNE
Ga0207193_10310586	F017972	GGAGG	VRTRHLQLVTSEHSDTMPNREDVRSHFGPVNPASTTWLAQETLRANQLAQLSELLNSLESVVESLNYKSFTLYDTLNTAIEAVSAALSDTQTESAGTDANGS
Ga0207193_10310587	F003863	GAGG	MKQVSGKQSIHYRNYRRARDRALVRLSHLYPNLYRDLLAEEKELDEQEGTVWSLVGDGKLSISTRTRANAVPDVAGRTDYERADESDNGGEA