Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1029384 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1029384 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6418
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (89.47%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

6418

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (89.47%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F023344	Metagenome / Metatranscriptome	210	Y
F050377	Metagenome / Metatranscriptome	145	Y
F063705	Metagenome / Metatranscriptome	129	Y
F085700	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_102938411	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQALFEDWNNANLDEGEAFAEYKFMQFAPDNLKQSYNEYYGYIEGDEFCL
Ga0207193_102938413	F001125	GGCGG	MGDRANFGFRDSNENVLFLYGHWAGYDMLAKLANAVQAAEPRWEHEEYATRIAISHLIGEDWNQALSWGLNINQISDNEHKVPVIDWANQTFTLYEEDLRTVVFSLSLSQFVDKYSRLVM
Ga0207193_102938415	F001043	AGGAG	MSEYKDGWDDGYKFAREEIMEKLSEIDINDIDSWILDRLSEMIEGGSL
Ga0207193_102938416	F000311	GAG	MYFELTAPDRLSMEMAYWDAQITGLDPQAMSPLTFNIGTGSIEKVSRLRDKYNLTESYISDYETTGY
Ga0207193_10293842	F085700	AGGCGG	MAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNALRLKSEWDKGYTSEGLLLADALNDMIEAKYGAVDRNLTIKSLEETRVRDSKYVMDLDSF
Ga0207193_10293843	F050377	AGGA	MTSTPTTTREYLQAQGITVGKRGRFSAAALGAISKAAQEGVVFTDKKNVK
Ga0207193_10293845	F000441	AGGAGG	MKMSDKYLNDQLSKAQALLWGGSETENIEAHNIIAKLIKEKIEQVEL
Ga0207193_10293847	F000263	AGG	MMNAEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARDEA
Ga0207193_10293848	F063705	AGAAGG	MTKSSAFLEYMKLHLISLNQDWDAAKDNLPLNEDEYDPSDDYFLGATEAVEHLLSVATDIMNSTNERVYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1029384

Overview

Ecosystem & Geography

Associated Families

Sequences