NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1025529

Scaffold Ga0207193_1025529


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1025529 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7109
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005451Metagenome400Y
F010080Metagenome308Y
F014136Metagenome265Y
F023340Metagenome210N
F043924Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_10255291F043924AGGMRQLVRVRLNDDEMRMACYAGVERRLRAIKLDRRPNQPERKYHEQNWFQSDISGAIAECAVSKLFGLQWEDLTEDKNGFDVLNYQVRSTENPDTTLKVRRRDNPDHNFIFTKVRDNRVLIEGWITGREVIEYDDEIFPDCFTIKNYRLYPITDLPEFPQLLPDGVEMFKPPAKRLGTIG
Ga0207193_102552913F010080N/AEAIRSLNKVEPGLRKQFVQDATRIAQPAITEVQRGYTQVPLSGMARKWQQNNKKIFPFSVARAISGVKLKVDASREAVSLIYITQTNVAAAVFEAAGRTNQNRLGDSLGQLRPGTTRILGPAVYRKRGEIEREMLKASMNAIRLVQKELD
Ga0207193_10255295F014136GAGGMELTTDEIIARLMNLSVKLDADMRFEEGATVSQAIALIMTMRNAAERMRHPSMSYNDEMKAIIEWIVEPK
Ga0207193_10255297F023340N/AMGQLLALPQNDGKQVMLPTWGYMPLWSKDKLTLVQIFTDSATEEIVKVTVATRRAPWMTFASITEVEQVD
Ga0207193_10255298F005451N/AMSNRPYPYYPSWDGKKTQPVTAKLVELMGKRWSTKSLGTYVNRPMRSGAGLSVHATGYAADIQYKDEAQARIIWDWFLANSKALGLCELHWYAYGEYGAGYRCSRGEGKTGVKIYTADDNAGSYQGNPNWLHFEMANQTAEAFEAAWRALPKP
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