Scaffold Ga0207193_1024842

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1024842
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7252
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F024787	Metagenome	204	N
F026555	Metagenome	197	N
F036148	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10248421	F026555	GAG	MAKFDYHKAMREGHGYNLYIADLLKHFGVPKVDVPEFSIATTHDQIRDKTLNEKDVIVDGLVLEVKSSSRSFTNADDFPFNPVMIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTATKYDWTIRTYFDADREIEERFYMTKKRHCRPFIEMVDLLLERANERTNQM
Ga0207193_102484211	F036148	N/A	MATKKTNKTVRRRRRAPRKAEQLNKLETHYVTLNEMYRAAKAAGFTNEVAYWLITEPGVSIPDWITDNKPNEIVPRIDPTDDEDED
Ga0207193_10248422	F009887	N/A	MEMIDKHGIKATFTDXXXXNDPRMLNINGVRECAGCGCVNHIEYKNHG
Ga0207193_10248425	F024787	AGGA	MNYEIYGWLVTITLFTLVALLIGVTWIVAVENGYDKGFKSGYKRGTADTKQTNVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDKENR