Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1023037 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1023037 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7651
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7651

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F011214	Metagenome / Metatranscriptome	293	Y
F012108	Metagenome / Metatranscriptome	283	Y
F053106	Metagenome / Metatranscriptome	141	Y
F074795	Metagenome	119	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_102303713	F012108	AGG	MINLQLSVRDAFELSNNCSREIYEKIVNAFEIALGVNQRCTVTITGGMTLDNRIYCIKAIRLHTGWGLKESKDWSDILVGGWKYDKFIPASANVRNSITLKTPEAAENLLRDLVEHGCEGFLS
Ga0207193_102303714	F006543	GGAG	MQKFTFNVDVVATELDRDAIVESLTAALNDALPGDVHANVKAGEVKSFSEQGYKVWRARVTGVTAEDAGDSANPKKVKETVEA
Ga0207193_102303718	F011214	AGAAG	MILEAIRKEKSIRWHERGDWFLNGELDLDYLANVTWACESILADGTALPDMWFYTHIYDARLVSLEKYMNVYASVHNDTDMGEALAQGFKLFAWCDSDEKIAKKRPRSKVKTEAWRKALPKLVVLNGVKFITCPEIRRGRGVVTCTPTEGSVSCEMCPKGLANVLFPSH
Ga0207193_102303721	F053106	GGAG	MAKYYVKSGTLEVILSKKNAFEAAIAGLLLTNKFDTIDEHFYVDERGYRDYVSADPKTSVVATKSIVRGAGWELSRDDD
Ga0207193_10230375	F074795	GGAG	MTKEEATIKVLKVLNSRMAVMCKPVRDEALTLAEEHGITVSELINEYEKIAMRV
Ga0207193_10230379	F104766	AGG	MEWISFFDRQPEDGQGIWYYGQHIGVWAGEYRYCPTDKYSHHIIHCHESLGVVDRMDAPWWMLDDGKMNRPEKPSRIVPPDYPSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1023037

Overview

Ecosystem & Geography

Associated Families

Sequences