Scaffold Ga0207193_1022766

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1022766
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7717
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F013084	Metagenome	274	Y
F024557	Metagenome	205	Y
F070110	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_102276610	F001561	N/A	MQTPEQKLKQLNKTIETLWHGVSDTKDGDYPRIVSLYKEVLKINYKDRDAWENMIWLMWSLAVNNKDTAWLFEAEKYVKRYLSLLPNGYRSHEYIGQFYRTMYIDERLAVRHYESAIRYQDATPSTYHSLIALCIKINDKVKARDYCVLALRRFKNDSYSTMRLKQLDAR
Ga0207193_102276611	F008494	GAGG	MNKEQAITSFMKAVKTYTTSIDKTAQTNIEYKKAVYALEDAVNQIYRVVDVKELGSNAEQRNAKISAQTAELITAKRELEYQLEVARAEESRAKTECDQIKYIIRALEVKDEA
Ga0207193_102276614	F070110	N/A	MFLDDFPIVIWFVRKSRNSYLLFDSANQLVMRRDEKRKKEIYQYCADNGIEVQDEF
Ga0207193_102276615	F013084	N/A	MGIMNVLGMMQEAREVATSRGHNVKNWDVLGGDCYLLECKDCKMQVMVKEYPLPNEIQLGGEAIALDCVKPEKKKLSKKT
Ga0207193_102276616	F007310	AGTAG	MRTVLWNDTERWFNHHHYEFLIQDITGFNLXXXPYHRAFRSKYSVYQDEYKSLVEKFNHQADNNGRIVVQNEKVEAFC
Ga0207193_10227668	F008552	N/A	MIISFEASANVDTTLFGYFSMQYDPEFFNDIKENLTEISKEDTLSFKLDPEEVKLLQGSYENVKRIISISDVEQNKFTNVFKRKFDTSGFKKFKNVKLHIDKDYFYFTGHHENLNGTKPVEFQSLNFDVRFIETLEHKYKSMVN
Ga0207193_10227669	F024557	N/A	MNSHVWIYFSKTGVGYELVGTDVISGMDAFIHGVDTYLVEYSHSDLMNDMHFFIYEWDNSQKKRKTVYESYKKELVLMGMVKHMDKMPLPISQKILSMYVSDEEDLVLEKNANS