Scaffold Ga0207193_1021597

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1021597
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8000
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018874	Metagenome / Metatranscriptome	232	Y
F048114	Metagenome	148	Y
F077007	Metagenome / Metatranscriptome	117	N
F078231	Metagenome	116	Y
F102518	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_102159712	F048114	AGGAGG	LNYGKEGEGEDEHRHRCLVREVIKMRLKNRDSAYRWFNGYVDERGKRYKGWNELHPKSRLEADVRDQWSKGNRGNEGEWK
Ga0207193_102159718	F018874	N/A	MTGEYEMHQLMLERQQMLEEALERAETGVATEDDWNIIRHECGLSKRPIVTLETVTLTRS
Ga0207193_102159720	F077007	GAGG	MRNQKAAHIDFFQFKGMIETNPKATPCDIDMIFERKCKFFVGEWKREGESISQGQGLLLRNLARQPQFTVVIIQGNTDGEMVVEKFEQLCSDGRFRVRGKSVDDLKKFVTRWYNWADAQEFQ
Ga0207193_10215974	F102518	AGAAGG	MKKIFIAVCAISALAGCSSNKEPHVTVQNLIMDRNIQPLSRGEQIDAIKDCQEAGLRARVIYGKRYVNGYSAETVIDVICSNRYAF
Ga0207193_10215978	F078231	GAG	MKTEPELIDIYAMFALMALMQKPSKVAKSKIDVAYEAYEQAQAMLDVREDFMDKRSD