Scaffold Ga0207193_1019326

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1019326
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8661
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006266	Metagenome / Metatranscriptome	377	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10193261	F006266	N/A	DPTVISFFFRDPVAEVIYLHRQVTIPRGEVPDEYVHYLMDRESKGVPIALPHDAGQAGRYTLTEQSIRETFEDNYGLNCIPGAILNPANDQGKVTNHKSYGINIMRLGMERKTLMINESCNAFLDEARNYAIDEGGKFSDPDDHIDSARIGILALVQGHGESMVSRANTFIYRRPEAVDGKVQRI
Ga0207193_10193262	F004695	AGGA	MLDKQNVIVDYIEAPQGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGRVNFEFERFSESDTEQSNQATEMVKYMLNSKNDSYQIIRDWAQDSLLHKNGIVMVSPLREPVTQYKEVEGTKDQLRVFETLAGEKGLTAKRQEMRKIDVDLQGVMQESPDMNDAETIQASLSANTIYRAKYKLTGYSTTVKVKHVAQHYFVCNPTISNIQDQDFVGFYDPMTIHECKAAFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDANKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPGDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLVQYSDDYNIQQLANVCAKGKPFMDAKSIENFEFIDRRMINIDLALGFLSDENRLTRQQLITQAQGAFSAAMMQLDPSVPELFFKLRRPFEDTLRVLGVKDVDSYLPTIEEATKIAQSKSQQAPNPAEQELASKVALNGAKVKDTEANTAFTIRKTQDMDTDDMFEAMAAKKGKLSSVQID
Ga0207193_10193263	F003521	AGGA	MKSLVLNIREYFNKRTKIKDTWKEADATRRTLVIENGEKASRLMSSEDFGLMFNLYRFNILERLEESKDDPDRITNAHYVAGVRDFIDFVEKQEFLGKVAKKANT
Ga0207193_10193266	F000857	GGAG	MIDDDIQVNEKYYSDGILEGGIEGVLAKNDKLFNEVKSGTWSQTFMTPNINYKVGSQDGARYVQYEQKNVEPIRQRCKEMREFYKENGTDNPFFAGTFHAMELPKCFVHEITSKYFNNRSWELIKMEKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK
Ga0207193_10193267	F005087	AGG	MALFIQSANSLVSRIAQWVGAIPSALSITVTSIDTVTGILTTSASPVGLVLIGDFIGPSVQGPFAAIIAVSSTTITVNDPDGIWSGLTTPVSILKLPTQSSVEIMSCVQMCELKMRTIELPALRSDPYTTATPAILTTNAQGMAPIPADMNSPILFFQDSQPSNQPAGATNMGPWIIYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVTIKAYYNKTFPFLFSSTGDALDPLVQTNSVLNSFPEGYLYGTLSAYYDKNKNTDESQKWDVRFDAAYGLIEDQNYKGKWRGGDQHLTSEYQPRSYRYSFK