Scaffold Ga0207193_1017275

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1017275
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9363
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_101727511	F102493	N/A	LPKFKTNNMTTTLTLTLHFDYENDDRENNIKGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF
Ga0207193_101727512	F041191	N/A	MRCWVYATMDEKMKLLWKPTKLTCEFIVPDIEKSDGVQKVCGFSRGWHHYNSIRLGIRKENDYCVLYFYAYIKGERTIQRIGGYAIGELVKCELNWGSYIECKANDGYAFRIAPRHSLPIGYQLYSYAEKDGVEGIEVPIEIEIMNLRIY
Ga0207193_101727518	F049410	N/A	MTRNTRYTNGKEVITFSKIDFIVIGGRKIDHVYFRRKDKVDLIMPLVEWNLKGKFEWEII
Ga0207193_10172759	F044325	N/A	MKQLIQRLLFGYRSNPDAYIPKGGAVLTQKGGNAEAIHSALVLMQYNIRNAEKIN