Scaffold Ga0207193_1015864

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1015864
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9924
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F002515	Metagenome / Metatranscriptome	552	Y
F039631	Metagenome / Metatranscriptome	163	Y
F056558	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_101586417	F000447	AGGTGG	MGYIEFARIDNDGVEWVDIESATPAELLDLEIGLFQEGAI
Ga0207193_101586424	F002515	N/A	MHKKTPEELRRLMELRRSNAASAIPNKKKYNRKCQSQMIELKKERGPHYD
Ga0207193_101586426	F000684	AGG	MTLHGYTYQIGDLFTTSKTGVTGRIAGFSPISNKVTRVSLVLANGSRRLAMVKTSK
Ga0207193_10158644	F056558	N/A	MGILDNFENALNHNFEFESKPMLETDAMGREKFWEDLGRPEETSLAVKLFSETCCTNCSCRQ
Ga0207193_10158648	F039631	AGGTGG	MTTLDNNYIKSSTYGHLSLNKRIAIAAEKVANGEVVNFRGASVTTYAKVMRLANQIKQERQFPLCPCEECK