Scaffold Ga0207193_1014011

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1014011
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10783
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (47.83%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F019834	Metagenome	227	N
F072286	Metagenome	121	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_101401111	F019834	GAGG	MKELKFTITGTIFVPDNVDYEYNFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHDIGFFEYEDAFFED
Ga0207193_101401112	F002406	N/A	MENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDED
Ga0207193_101401115	F105155	N/A	MMMQNLVKISAAKQLAAEIKYLEWDLVTFNFYHKTYKGYNFYKRNISLNYWQYTVTNDITHCTFKMYEKEANNA
Ga0207193_101401116	F006182	GAGG	LKINFNVTGTMEIPDDAIKHYDAAGKLYALEFNSIMYMLQVCIVAEAGAGGWEILHQYEEMENHSITNVRYDDAEFSED
Ga0207193_10140116	F072286	N/A	MELENPTTEKTFVYYVTERHGYVETTLAYLRRLKISKLISKFSKHMRGKVYIEEDGDLKLFLKRLEYDNIEVTLKEDYTKPQSFFDNLLCLDDYTWTNEQFDKFSTNWSIDFKCYFSKQDNIKHVRDGIFETKDGKQLKIYPTVYLDGKPLSPAQAKKIGFEPQSIVTNDLEENYD
Ga0207193_10140118	F002398	AGG	MLPLLHVFLLTSVDPIKKFVSLKTYISENAKVHCQVYFIDESIADYPRVNLIEKSRVDFFAYLDTIGIEHTPVGGYFFFRKKPNNE