Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1013489 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1013489 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11059
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (55.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11059

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (55.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F029440	Metagenome	188	N
F043935	Metagenome	155	Y
F060914	Metagenome	132	N
F078699	Metagenome	116	Y
F084222	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_101348912	F078699	GAGG	MKVGFQVAGTMQIPDGAIVHEDYLHQTYALEFNNKMYMLQVCLVAESPDGEYEMLHQFEEMEEHGIKNVRYDAAEFEPIVED
Ga0207193_101348914	F084222	AGGA	MSRELYLSRLALEIEKYEEKGNVRKAQELHNYFLKVANIRDLDPEAFADDYREEQDLMPKLNEEYYGEYQENPDEDIVDDSLGSDMYDHDVNEFKNDTSSNAMNLINRLREELQHNDLALKIIDILEEELD
Ga0207193_101348918	F029440	N/A	VKNNKFIHIAPRDLKKKDIDWKMRPICDRINASDYCWTVFCCQGHFSGNQKGGLPYLVLLCVNEKRPDVLNKLYSAFEVDEKYDDRLPLCGPRSNMMLISMGVKDENFTYITIHFNAQGKNDQDYCVKIMDRFSRTI
Ga0207193_10134897	F043935	AGAAG	MTKKEIEILDDQIQYLCNHYQDRIKIMRQTLGINTNFDFLREVEIIESLYKSVLEHRKTEKATYFSCGTSGWHITYLRNKKTYKDGEKFVIKIYFSFVEADNYE
Ga0207193_10134898	F002398	AGGA	MIAAISSIFFLLSSLDPIKNFVSLKTYISLNAQKHCQVYFIDENIPDFPRVNLIEKNRDAFFEYLDTIGIEHTQVGGYFFIKKK
Ga0207193_10134899	F060914	N/A	MQMKRLIKVRSDISSSIFPIELYQVDDYFTAEENGVELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKVQGIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1013489

Overview

Ecosystem & Geography

Associated Families

Sequences