Scaffold Ga0207193_1011375

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1011375
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12399
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F012663	Metagenome / Metatranscriptome	278	Y
F036236	Metagenome / Metatranscriptome	170	N
F071029	Metagenome / Metatranscriptome	122	N
F080900	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_101137511	F080900	AGG	MNKFLSEIHALTWTLAGTGMVLITLSGNTRNLGIQITIAALIVHMVGALVKEK
Ga0207193_101137512	F036236	AGGAG	MEKVKDISGRIVALFLTNALGVVTGAAVIAPDLEVWKSALIAGAVSIFKVAEGLAKASIDGVLTKEEIDAAFGATPKKIAAKRAAKKVEVK
Ga0207193_101137517	F012663	N/A	MMFKCIKCDRDFASDELPRRGEICFACHVRTVNLGFTYGKEDFHGPTIRERQRQTVEQAAINGYNAEPVTNWM
Ga0207193_101137518	F001396	GGA	MQQIWVPIIVALISGPVVVVLQKLRKENTDQHSEARILLRTIGGKVDKVASKLDQHIGWHEGKKESE
Ga0207193_10113755	F071029	N/A	MDNILDPRQEKFLNWLMVPQTHRVPSSQEKYALEEGVDETTLRRWKKKPAFKLEWERRVGELQQSPERTQKLLDNLYERALAGDNNSAKLYLQATNRLAPTQVQVEHSTKPSEISDAELDALIASVAQSEVESRRELKAL