NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1011375

Scaffold Ga0207193_1011375


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1011375 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12399
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F012663Metagenome / Metatranscriptome278Y
F036236Metagenome / Metatranscriptome170N
F071029Metagenome / Metatranscriptome122N
F080900Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_101137511F080900AGGMNKFLSEIHALTWTLAGTGMVLITLSGNTRNLGIQITIAALIVHMVGALVKEK
Ga0207193_101137512F036236AGGAGMEKVKDISGRIVALFLTNALGVVTGAAVIAPDLEVWKSALIAGAVSIFKVAEGLAKASIDGVLTKEEIDAAFGATPKKIAAKRAAKKVEVK
Ga0207193_101137517F012663N/AMMFKCIKCDRDFASDELPRRGEICFACHVRTVNLGFTYGKEDFHGPTIRERQRQTVEQAAINGYNAEPVTNWM
Ga0207193_101137518F001396GGAMQQIWVPIIVALISGPVVVVLQKLRKENTDQHSEARILLRTIGGKVDKVASKLDQHIGWHEGKKESE
Ga0207193_10113755F071029N/AMDNILDPRQEKFLNWLMVPQTHRVPSSQEKYALEEGVDETTLRRWKKKPAFKLEWERRVGELQQSPERTQKLLDNLYERALAGDNNSAKLYLQATNRLAPTQVQVEHSTKPSEISDAELDALIASVAQSEVESRRELKAL

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