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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020048 Open in IMG/M |
| Scaffold ID | Ga0207193_1010413 Open in IMG/M |
| Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Minnesota - Twin Cities |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13168 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Manganika, Minnesota, USA | |||||||
| Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001883 | Metagenome / Metatranscriptome | 622 | Y |
| F002391 | Metagenome / Metatranscriptome | 564 | Y |
| F035312 | Metagenome | 172 | Y |
| F065557 | Metagenome / Metatranscriptome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207193_101041315 | F065557 | N/A | MGVRTTGSLGGGADIKQAYVVFEKNVVMPLRDQVEEIVNELLALAKIPGVYMINNFQIINETIVEIEGDASKTADAINSLSPLVATKVLNAMTPNEVRSLASLPPIEGGDIIPTETPAP |
| Ga0207193_101041317 | F035312 | AGG | MPLWWDERERIQQLNTDIVMDFNEIAFTIITILISGVAYFLKGVHSDIKALADEQKRIIETQGRLKGKIELVDNESRFKYEAIEKMTQLEIKHLAEQISELTQSVKKLIEVQLTR |
| Ga0207193_10104135 | F002391 | N/A | MNTDNDILIANQGTFVVNNTVEKTVTINAIVVLEDTVFNTIKMAGGDVKSAYIAAPGTAVKAGAIIRATKSQQFSGVRLTSGSVALVLA |
| Ga0207193_10104138 | F001883 | N/A | MARYANTGEFNVLYPTRRRMATILKRIIRNDVVDGQGTLVESIRINAKITSFEKLEIQIIAMYYFIFLNNGAFLWNGGVITPRDYVATFTQELNSAGITAEIYSQYTEWLAKRFPILEVAEILEKNQRITYTFEALDPPAGFQVGFPLDV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |