NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1009080

Scaffold Ga0207193_1009080


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1009080 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14412
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F010155Metagenome / Metatranscriptome307Y
F011844Metagenome / Metatranscriptome286Y
F073468Metagenome / Metatranscriptome120N
F105046Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100908013F073468N/AMIDNVKTSLFGAVAGLPIIYEGAMANDWKMVLAGIGMLLVGIFAQDAKK
Ga0207193_100908014F105046N/AMEQGVIITIIIQTIAFAMALSKMFTDMKIKLRELDLRVRNLEKKEDEIGDKLTKIFDALQDIKLELKDKADRQ
Ga0207193_10090806F010155N/AMLDTANSVRGIYVTALNGNLSYNGKDVPVYGQTPFRTTPQNYVVIGNITETSDNTNHSFGNDVEVVVDIFSEQYRVNDLSVVDSIASQVLNILIPNPAITGFSDANFQVFPLGRTSSRYLPLQDGDNYVARKIITINNLVNQN
Ga0207193_10090807F011844N/AMAQILGANQNVEIDVAGGTSFVRLVCLRSSSVNTTMDATTEQTNCGVLTSPSEPQMTVDFDAICETAPGSLSPAAISYEELLAAMVAKTLVNVRVQSPLFSGSSYGAVYYHQFFGYITDLTLNQSSTEFINFSGTIQSTGLLDVTP
Ga0207193_10090809F004112N/AMSPRHFSLMLRGFNEKKVDGYKQTRLLMFTMVRLMGDPKTAPKTPEALWQLPGDEKETPKDEEYREVFNRLTKWQKT
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