NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1008114

Scaffold Ga0207193_1008114


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1008114 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15446
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032962Metagenome / Metatranscriptome178Y
F032998Metagenome178N
F056345Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100811413F056345AGGAMVFELNRQRGISLATGIERDLNQCQIRVGGKLVGYLPFGENPQIQAIFEFPHDALTAEEIASLEMQLEAIQGYPAKVRGPEQVSRTFVKAALEAIAQAKAEDEDDE
Ga0207193_100811414F032962AGGAGMAALTVADTGLGATISGTGLITAQVVSIGEMTISVDSLDITHLGTAGFEALRPSDLRKNPEVDIVFNWLGAAIPITTDMIPTAEPYAGIATTVTFPGAGSLQGTAFVKEVKTPKLAKGEVMKGSYKLQFDGATDITFTPA
Ga0207193_10081149F032998GGGGGMSNELVGAELRKGSGFARKGQGFQLILGETWNYRVKTDQVTSNRQSILYDTPGLPRAGLLYGPLGLICDEVSCEREEKHALYWNVTARFQTGTEEQKQNSEANPDPATWIPIFKIDSFVTKEKVLTKDRSTPAKYPVNSAGTPFDQPLTDTSSFCQFSFVQFDDPGLKLKDFLDRNDIVNTSAFTALGQTFAARTLLLEVQEAELGSYAGYAAWRAKYKVTYDPDTHDEKRADIGPFYLDGGNKVRYMDDTKHFPMIGALNGSGAKATNPAELVFRCKKEVEFNTIIRTS

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