Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1007521 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1007521 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16250
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (86.49%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16250

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (86.49%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F015702	Metagenome	252	Y
F046323	Metagenome	151	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100752112	F079979	N/A	MMIREEEDDTTQEVRALVLLGLKSEVAVLVDKIQAAKVPVTDEWTDGLNAGLDWAVRILNKDKSTS
Ga0207193_100752116	F012770	GGA	VEDIEPPHNYCNDCEIEFEDSFQLIDHFLEDDEEFDPYYLLPSGFKLMLGSLLRFMFEHAEEPEQIKLISQSTYVTLFASENGYDLVDELVEDTIVKSALVDFDAGLTKLLEEGTNDSEGGA
Ga0207193_100752120	F008237	AGGAG	VTLEWARIEPWQYVVDSVASEYHRKFSDIDLEDIRQSLYQWFVEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLSPVLRGEWGQTHKLNLGRPGKPSAPNEGGNMMAMMIEVDFAYWKLSKDDKKLLFLRHAEAMDFPDIAKELELGSEDAARMRHKRAIRKLINKIGGFKPYRDEDLEQMSNQEQSSVE
Ga0207193_100752122	F003658	N/A	MLDLTGTPIMTCICGCKMFVITVMWDEQDREVSWYDLRQECKECGAISTAPTPIDWKD
Ga0207193_100752125	F046323	AGG	MKQQFQVVYETKGVKVVNVWLPEGTELPTEWNTMTFAEQDEWLYNNQDEAHLQWTDEQEGKAVNVLPVSQLKAVI
Ga0207193_100752127	F015702	AGGGGG	MIKEIELEYTDNNLVRLSRKVWGENATEYLAGSLESVITYNQLKVLIDSLKEKEDE
Ga0207193_100752129	F005558	GGAGG	MTEQLSWSELAELTHATQVAKFNFCSCEDNEGQENPYTDCPTTGEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1007521

Overview

Ecosystem & Geography

Associated Families

Sequences