NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1005302

Scaffold Ga0207193_1005302


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1005302 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20467
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (62.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002997Metagenome / Metatranscriptome514Y
F014737Metagenome / Metatranscriptome260Y
F023109Metagenome / Metatranscriptome211Y
F024113Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100530216F014737GGAMTAIAALSGPQIKHAEFVKLTVGTAATVYTFCNAAAPITVGGITFSNLGALLNVGDVQRDMRSTSDDMTIALTGIDPTNIGIILGNDIKGSLVEVWRGFFDANNQIITTPTTQFFKRYQGIINSVSITEDFNSEMRTRIATCSIACSSMRRILENRLGGVKTNQSSWQFLYPGDTSMNRVATIANTYFDFGKPPQTDTQSTDTTTPNAEA
Ga0207193_100530217F023109AGAAGMIRLATRYDIPRLLEIVEAYAYEMPVKTLGRPCNHFPKYVEELLFSIIAGRGFIYIDNNMRGALIAIKQGNVWSPKVKELNELLWWVEPEHRNGTIGGRLWKAFDERAEAMLKAGDIDFVVTSISANGPLIDYTKRGYTPLGASFVRE
Ga0207193_100530221F024113GGAMAVFNRNSLAQVSGFDNPILAGELVWDQQTYWNLSFTSLGLPVNLTGATIDAQIVRRNVTNIQDTRNGLTFDIADYTPTPAAIPLTITNTVAVAGTCTLVIDAGAWGLMATDPQLDINAQNCVGYSGRVKVSFPASGGNPADDMIIFLLFLVRSDGIVVL
Ga0207193_10053025F002997N/AMTIARFENININNLTFTKSAFGESATVQTLWFVTRAKVASVANSLKISEKYRLYQDMTNFTLNYTPNMKEIVDNQNLYSITWRGKDWRIDSARETDDRMNIIFLCYRSDPVTAV
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