Scaffold Ga0207193_1005142

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1005142
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20860
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005479	Metagenome / Metatranscriptome	399	Y
F071173	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100514211	F000258	GGAGG	VTANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYDDNWLICCEQILFTLYSTSVADINEIRNYMTDEFRRMDESARDINQWAGLSDKFKFHTIWVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL
Ga0207193_100514212	F001900	GGAG	LDNSGLLVQASSGLERMMYANQNGPLKDSTVAQISAYVYYEAAVISKLTTNARFKAAFTKIMFDQIDTDFGNYIDALARSKPKSLHHVYEWKKAGNKSSRLFKLNRISEDGLSFKINYSLLPSKSMVPTTDGTRRHVFANKASIMEEGKPLVIRPKNAERLVFKVDGETVFMPKGKSVTVKRPGGSAATNQFNLAHSRFFSGRLVNESIKRSGFQKIFNSSLTKALRVPSDIKKVQYSFSPNTIKSQADAALSAAFGGAM
Ga0207193_100514213	F001229	N/A	DSVLSMNLDVYRQSEIQDTDTGAIVKEWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPITDPFGRVIAYNSSMKRSENQQIGQ
Ga0207193_10051423	F071173	GGAG	MITKFGKRFLTSYLSGNNSFTSKELALGIGSTTPNAKGNDTRLKFEFYRLPVELSSFNVLETGVDGDGDPTYSYFVTYKSTIPQDISGVVSEVGLYPGDRQSFNNFDSKFITSFTNEFNWFNGSDNPTSQGNTQDSSGAYTFLSKVSDSMVRVDVTSGQTKEYINSLISDDISGYSINDTIAIAYKKADNNVSKIRVKFYSSDLAYYYVDFTPESGTGDKIQELSLSNLFSNYTAAPNLPDPASIIKIGVATTATGGNTTVYFDAIRINDEDTFDPGYGLISRSVLSTPLIKKPGRPVDIEYKLQLDF
Ga0207193_10051428	F005479	N/A	MPELITTLQALKKKDYEDKKFFASLKGVDIGDNENDKNGGPTFEDMELRAAGINAASNDVVSLQGRFAAQAGFGIGEGLGYSRE