Scaffold Ga0207193_1003010

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1003010
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28801
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (21.74%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F013294	Metagenome / Metatranscriptome	272	N
F016965	Metagenome / Metatranscriptome	243	Y
F023327	Metagenome / Metatranscriptome	210	N
F033725	Metagenome / Metatranscriptome	176	Y
F035679	Metagenome	171	Y
F061680	Metagenome / Metatranscriptome	131	Y
F096907	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100301010	F013294	N/A	MKRVLDRYISTHYHEVRAYTLYFLTKMGSNIEADTVINNSYLHVLSINEDTESEAQVKSYLLNTIKYQILWNTSLSHKDDRVTSMEYDASEQEDNEQDLQAKILEDKIYSTHKGLIEIYRSEIDDHVHRIVFEAYIDKGYTTARGMAKYFDIPVTSAHYLIREIKQNLRKLQYRYETISN
Ga0207193_100301014	F023327	N/A	MQIDFMCAVVEDYIYRMKGVQVRIDRNAVATDGRQMAMLMNAYQTAHGDKEHNNI
Ga0207193_100301019	F004366	N/A	MNSLQAIIDHIELFYTNHLQVKKVGSEFKEQLYNFATKDEKYPIVFVVPVSVTPTENTSEFNFDVYCFDIIQKDRANIITILSDTHQILNDLYVYYMDGTDYAFDVIGLPSFQAINNDLLDYAAGYVMNITLTVNDWTDCAVPI
Ga0207193_100301021	F016965	N/A	MFSINGIEYTITGPIEVVSDTQLHVETDKGIILVDDTMEIYKALING
Ga0207193_100301022	F001883	N/A	MARYAKTGEFNVLYPTRRKMATILKRIIRQEVVDSEGTLVESVRINAKITGFQKLEIQIVAMYYFIFLNNGVPETANAYGKNGGSIAPRDFVAQFTDALMQAGLVAEIYRQYTAWITKEYPLVQAVEVLEKQYKLVYTFEALDPPAGFSPNYPLDV
Ga0207193_100301024	F033725	N/A	LFKNLTMITILNREIPNQIEELTIEQFEAITDINNDTTLDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVRDFNSSEQKDYPTIEELELEGYIYKAQLKLTVRDTKLIEKITIKKEKGYVSEMLAIMFKREDLTPAEHYTEAHIKHKAKLIRKMNAAISIPYIMFIAHKIGQQANDQLTEAVE
Ga0207193_10030103	F096907	N/A	MKTREEFFEAAVISAMQGLLAASGHYRDELIKNPCEYVANAAREYAAELTDQVYGPPIDFPSEHIFGKQS
Ga0207193_100301033	F035679	N/A	MRYLIPILILISCSAPKRAQWHYKKALKNGLQVVQDSDTIRITTVDSIPVIMNDTIVWEKFYTTKDTVIKFNNIYVPKTRFQTRIEYRYKTRVERIRGKTIYKTAQAEQVVKYRWAWWPIVISFFLGIFLRFLIQKGILDRISLLFKL
Ga0207193_100301036	F061680	N/A	MQVTLENSTAFFDFDDVQGSCEFNITNITDEDYEVEITNVLATQVIGEVELDYILTDFELDQLNEEIIWCIQDTNLVRDMQDFDNGFDEDEWRYDA