Scaffold Ga0207193_1003009

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1003009
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28808
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (30.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F001338	Metagenome / Metatranscriptome	719	Y
F001923	Metagenome / Metatranscriptome	617	Y
F007416	Metagenome / Metatranscriptome	351	Y
F017613	Metagenome / Metatranscriptome	239	Y
F088512	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100300910	F001338	N/A	MTQPANDRPPLKTIEQSGNYRLKLIAPKFEKVKTWEDGTVSARIFFVDVEGNCLSKNYSAKYGKALAMLVGKFSGKYTAELRLDATPAEFLEYLKPAAGQTIDVAVTVEPNGEWQGKPQFKYKLGFAKGATKATPAPDSNMEAPPF
Ga0207193_100300926	F001923	N/A	MSASPVNPEDIPPELKDGVVASILGGLAMTARLLLSTEPVTVGWVIRRVFAAAITAALVGYGVQDHIQSTGLRMAAVGAAGYAAPECLDYLLKYIKAKGEAEVAKVTKGAKRATGKAKPKRR
Ga0207193_100300940	F088512	N/A	MGTKSIRHIVEAAVASHLAAESGLTGVNIYTGDDGDINVLPKAIVLCDSARTPADLPEGAGNYDCSVRVTIFSNADDTTLADHRARCAALAGSMQDLTGLKAVFVASGDATLYDVTPNSEDEGKDERSYATAFTFGLLAVLAP
Ga0207193_100300942	F001298	GGGGG	LCRFAKARKDVSLYSEFLPDAKEILADLGVAGSCNNGAITFVCMLSDPAMTQVFEAGGFCERTQHTVRLAAATASWSLPDGSNGASAAVISGGAPIASLAIGKKIVAGGKDLRITGQTYKPASAWITLVVIDDNQ
Ga0207193_100300943	F017613	N/A	MANSITAAPAVLAEGVIGSLKNKLPVLSGISTVFSSRPGVNGLSIQVPLIGTSTATTFGASGYLTQDDATVTSATVTLVHYKVSSRFSPSNLKEYGAQFFVNNFVQTASIALAQKVMDVINAQVTNANYSTSSTSGADLSYAELVAVQKTLDDAKAPGPRYAVLNSTYVSDLRKDTTIVGNNVLGANIIRDGDLGVIAGARVYQFANLAANSENLAGWVAGPDAIAFASALPETEIPGWEVANAIDPETGLGVQVIMGQEQSGYMNVTATLLAGAAVGRATSLVRLKTA
Ga0207193_100300947	F007416	N/A	MQYQMASGIFIGLTEDELLAIKAQALADITSGKVLTSYSDSGSSASKAVTMPAKERLSEAMFALSRLDPQTYGVRKTIVSTNWNNPIDE