NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1002452

Scaffold Ga0207193_1002452


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1002452 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32210
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012663Metagenome / Metatranscriptome278Y
F041738Metagenome / Metatranscriptome159Y
F048262Metagenome148N
F048959Metagenome / Metatranscriptome147N
F069861Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100245218F069861N/AMTKRKYTGNSDGVAKGLRPGMKVFIDEVIKLSNGALWNNGAFGVRNMRSKNSLSVHATGRAVDLSYRHMVDAYDASNTKGIKNGRIEAMRILKILVANADALGLEAALDYIVKPHGRGWRCDRGGWSNYKTKTMSGGGSGDWIHLEISPAMADDPQKMREAFQNLRLP
Ga0207193_100245221F048262GGAGGMSAAVGENPVQSVSELQPLREAVAECIELLSEQDQFIVNAVNSEMISLEKLGKRLGVSKPHAWRLRNAAYDRLRVHLLAHPIIRERLFLDDDESGHSGF
Ga0207193_100245229F048959AGGAMRKMEPTLEVSMTLSELRAVVKSLAIGVDQLAKKIHRFAEDERIENERIDSIHTELTELLSAKHEMETVMSLALQGDSA
Ga0207193_10024523F041738AGGAGMQKVKDFIYNNPVRVAAFVSSAVAIVVAFLAPQTPVEPAIAFVLSALGLGEFAQRAENKKTDEALFTEIPE
Ga0207193_10024525F012663N/AMNEFRCLTCLSTFEADELPRRGSICFKCHVKTIRLGFTHGKEDFHGPTIGERQRQTLADAKANGINAEPVTNWM
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