NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1000076

Scaffold Ga0207193_1000076


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1000076 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153571
Total Scaffold Genes252 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (20.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F020696Metagenome / Metatranscriptome222Y
F024316Metagenome / Metatranscriptome206Y
F040720Metagenome161Y
F047638Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100007610F047638AGGMKISDIILEIQFSIYQAMVRITHSEDATVQDVGEMLRAVPGVLTVTQVSHESNNNTAIMKVKILTTKTAQEAFAAFKQNSISRVPEVKKLEVAEKTIEKKK
Ga0207193_1000076108F040720N/AMRIYQLRTAKEFYNSIKGNFTTEELMQMYAEDVAKRFAAECANEALGNKMEVSNALHSRIESMYKSIVWENEG
Ga0207193_1000076136F001222N/AMKLDKKTILETVKQVISESARIKFAGHQFMLKVDVNEDPQKKGIKVQFIPTTFGQISSTQQNDIAIELEKRLEAGLDQYDLKVERDRNLKDKTVVGFFIYIEYFDKIIRQVLSDQNPRGAEEEAM
Ga0207193_1000076189F020696N/AMVQTIILEMKKLETCHHCGEEKENCYHGFITMCIPVPEMEEKIDKWGRKDWWENLERTDLTPEQMEELDILSLYDQMLSTVGRGVQCDECGKKEAELYEKYYSRNLEK
Ga0207193_100007637F024316GGAMKLSRIILEGPLEYDAKFNREVDKLEDEGAKYIGSGDYGSVYLLNGKAYKVTTDPIELDHAEILKGKKTNNFVYIYDVERLSEKLGIITMPIMGKNKSEMPEEFLDNLEKEASNLGIDPEELDIRPDNFMVDPKTGHLKMTDV
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