Scaffold Ga0207193_1000044

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1000044
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 179378
• Total Scaffold Genes: 281
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (13.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015094	Metagenome	257	Y
F018370	Metagenome / Metatranscriptome	235	Y
F021773	Metagenome / Metatranscriptome	217	Y
F031102	Metagenome / Metatranscriptome	183	Y
F095528	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_1000044159	F095528	N/A	MATKTATKKIAAPKLNIQHSYITLKLPTGNFTTSFGGAKVSGQLVKMKGAFEALDKYVQTAGKTKSFGEAMNDLLNPKLLDKLVPGWDKPVVAEVFAPKDQVSFKDGLFAKKYPGTYEVRQMKGKYTYILLPNKAGNLESIGFASTELTKK
Ga0207193_1000044240	F021773	N/A	MKWVKNYKLFKESKQDSIYSVKNLVQEICVSMVLINNEFLDNILDRGLKARYSEDSSVFITDLKNLLLAKNRLNLGRFEGNKCIVDDEISKISGLFEATEFSIEKDWDKLSSARTTARNIIDKLLSDEKLSSDRIRMIYWLGPNIDSEHQENIVIELNDGKQYSLFLNKNLATQKTASFNTFADDLIGTDIQKLYNDDYLTHWNKLTQEWVKIIYENANKDIQKHIEKFIDPRRIETMGYFEYFDIRHQDPRYKHLGEFIDVFDKNILKFSDLLNEIWKKKDNCFMDVERVTEEWLETKIVIMNSKILENLLTTSLKTNFSEDIQKTENELKLANGTVKMKLFKTIVEKMGCLERNLYFLGNNGNVFNMVPSREFFRKYYEDLTLKFDYHVNFVVNEEDEENNDFIIKIILELDGEQLIEMFINVKFAGGEMSGKLNAKYKFELADNFNYLISKKQLSEFEPNSDEEDNLED
Ga0207193_100004425	F015094	N/A	MKLKMFSIRIEEKLIEEYRMFCEENSINISARLRKFMERDMEQWKQRKIAIQRNNNNNNTKPS
Ga0207193_100004450	F018370	N/A	MKIHILWCTIRPAQFQSAHSEWLKRADNPENIQTYVAVNWKENADELREYLSKNFLITLNTNKIGVCYPSYQLSSNLGVKMGKCEDSDIVVFASDDFMAPQGWDTYLKNKLKGKGDVGLMVRDGYQLPDSSNMLHAAITIPIMTYGCLRKMNGIIYHPAYNHMFSDCELYNNLKELNLLYDDRLNDETIFEHLHYAAGKRNADQADQAYNAKWAEDDLTWQKRKIMPVEKRLEI
Ga0207193_100004475	F031102	GGA	MREVIKQKYGEAEKGIKGATASKRATKKAEKKDTGKYVTKIVDGVKYMVLK