NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1000043

Scaffold Ga0207193_1000043


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1000043 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)182728
Total Scaffold Genes260 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (10.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F032658Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_1000043247F002045N/AMEFFCVYIKTRKKLDKYIKVNKIRNKYIIDIKKIIDEEDISFDKEKTYLKIIIYQKIQQAIEKNKDIYYIPDFETDFSIDKLLNIRKILGQENNFNILIFYNEFRKNQDLLNDVLSNLSKFSASQIIRDY
Ga0207193_1000043250F032658N/AMDNKIVKYSDWSQINEAAARMPKDINYWLKRGKNGKDVALYMHDDMDGIYTSLIMKKYLLDSGFNIVKYGILNYTDGWKYTTLDPKLINIVLDFANMPGDERDDLVDYYLDHHGDFSEAEKEKYKSKPVQKVHTASAYEAICLALGVTMDKLVLQSIDMIDSAKYTHYGISWQRLLDFNLTDIKNSKEIRLEFAAAFNQFLKRSDTKTIIAVVHNCKDASIYSIFHTMKLLYPEHNVDRSGIKKDFLVDSDWRLNQMQKRTRGKNTDKKQYNTFQEFLDEFQQNGLIKLDGYVLIGDLVFVPTGTWANALRARTIVERDHMDGKLPVLPKFILLQYGGTLQVCAYGNISKMEGLPMTKNGEVINDLGRYMNGLLDNFQEHLGYYEPDTTIGQDEITVSGGHGGIGSISNIFGKCKVGTFNGSRFIDMFKNKIIADLSGVKFKLDLKWSEASEGKQKPLAMDNKVMNVEDVTKMDRQGRIIRKNGDL
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