Scaffold Ga0193753_10001023

Overview

Basic Information

• Taxon OID: 3300020034
• Scaffold ID: Ga0193753_10001023
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25018
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9767
  • Long. (^o): -107.0044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005455	Metagenome / Metatranscriptome	400	Y
F009744	Metagenome / Metatranscriptome	313	Y
F041878	Metagenome / Metatranscriptome	159	N
F069103	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193753_1000102315	F005455	GGAG	MQDEAEITISGVKLTHDESMTVRVAIDTLANVLAEGLEEGETQALAERYLNSLSRIQTLLESRETRRQ
Ga0193753_1000102322	F069103	AGGA	MAFKSQVFDDLLHFASASRSKSAVTLAAVSFAICHLVVMGTRSLGASADLDVELPRQIIYFAAELCRFALPLGFIVAGFATRAKKASPSQPKR
Ga0193753_1000102324	F041878	GGA	MEQALLIQAAASIAGGMAAAHYDKFSGLVASRITEIAETAVKIAKAIEIEARKAP
Ga0193753_100010233	F009744	GGAGG	MAIQDYVRSIAATETVSKAQVFRFLEMQFARADKNHDGELDADELAAFVLAVSRPETDQR