NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193753_10000113

Scaffold Ga0193753_10000113


Overview

Basic Information
Taxon OID3300020034 Open in IMG/M
Scaffold IDGa0193753_10000113 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73555
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (74.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9767Long. (o)-107.0044Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019506Metagenome / Metatranscriptome229Y
F066229Metagenome / Metatranscriptome127Y
F082956Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0193753_100001131F019506GGAGMRLISSMLVSLALSACATDYTSQLYEPNYGIRSLHYSPADVDPIMLMNGTYASKQINGLYEATPMNAVCLTNYRCSPEARQPPSGWDP
Ga0193753_100001134F066229GAGMPEPTLKFSVTCPDCALESVSEIPIAVIANSLLTGKSLRLYSHCHDRYWTATFVEREKLRKHLATLNIDTHATPTRLHSEDLVFAD
Ga0193753_1000011347F082956AGGAGMKALNGFAALSLSLILGLVPFALIAVDDFVVAKTEVSTTAASHSEHALGMEGR

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