Scaffold Ga0193753_10000113

Overview

Basic Information

• Taxon OID: 3300020034
• Scaffold ID: Ga0193753_10000113
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73555
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (74.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9767
  • Long. (^o): -107.0044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019506	Metagenome / Metatranscriptome	229	Y
F066229	Metagenome / Metatranscriptome	127	Y
F082956	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193753_100001131	F019506	GGAG	MRLISSMLVSLALSACATDYTSQLYEPNYGIRSLHYSPADVDPIMLMNGTYASKQINGLYEATPMNAVCLTNYRCSPEARQPPSGWDP
Ga0193753_100001134	F066229	GAG	MPEPTLKFSVTCPDCALESVSEIPIAVIANSLLTGKSLRLYSHCHDRYWTATFVEREKLRKHLATLNIDTHATPTRLHSEDLVFAD
Ga0193753_1000011347	F082956	AGGAG	MKALNGFAALSLSLILGLVPFALIAVDDFVVAKTEVSTTAASHSEHALGMEGR