Scaffold Ga0182178_1000166

Overview

Basic Information

• Taxon OID: 3300020023
• Scaffold ID: Ga0182178_1000166
• Source Dataset Name: Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2545
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011361	Metagenome / Metatranscriptome	291	Y
F023774	Metagenome / Metatranscriptome	208	Y
F041565	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182178_10001661	F041565	AGG	MVWIGSVRSEKFKQDIIAQTFALIAPVWRVLHQVSCCSKTVPNAPKWKETHQNMSLGSNGVDWECSL
Ga0182178_10001662	F041565	AGG	MVWIGSISSEKFKQDIIAQTFALIAPVWRVLHQVSCCSETAQKAPERKETHQNMSLGSNGVDRERSL
Ga0182178_10001663	F011361	N/A	MFSCVSFRLGAFGTIMLLHKLDAKRAKLVQLMPKFVPRCLVRNFRNERSRSTPLEPKLMFWCVSFYLGAFGTVSLLHETWCKTRQTGAINAKVRAMMSC
Ga0182178_10001664	F023774	N/A	TVQKALERKETHQNMSLGSNSVDRERSLQKILTRRRGLNFCINCTSLACFAASFVQ