Scaffold Ga0182178_1000079

Overview

Basic Information

• Taxon OID: 3300020023
• Scaffold ID: Ga0182178_1000079
• Source Dataset Name: Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3406
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004068	Metagenome / Metatranscriptome	454	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182178_10000791	F004068	AGG	MRWIGCICCEKIRREFVAQTFALIAPVQPILHRVSCRNEIVPNAPKHYETHQNMSLGPDGVDRVDLLQEILTQLCGLNFSINFNSSARFEPSIVKQRDEAKCTQTLRNKTKHKFSVQWGGSGAFIAKNSDTTSWRELLHYFHHFSSFCTEFHAVTKWSQMHPNTMKQDNRLV