Scaffold Ga0193733_1056814

Overview

Basic Information

• Taxon OID: 3300020022
• Scaffold ID: Ga0193733_1056814
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1103
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004186	Metagenome	449	Y
F081675	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193733_10568142	F004186	GGCGG	VPTPAAPTAKDVLAKPQQSDLKDAHFTVTGKITDNGTTVDLVGDGALAYKPKLAGRFKFTTNVGGEQVAIQEISLDGTNYGLTPASPKWVATKSTSGIDPSAFAGASEQKYIGEENLPQGKAWHASAKDKDGNAFDAYIREKDGYPIKYVETQTGGQNITLTFDKYNTGETITAPPADQVQQG
Ga0193733_10568143	F081675	N/A	GAGRFKFETTVAGQKVSYQDISVNGVDYTFVVPGNGKWTAKTTTSGLGRDSFTGASDFAYVGEENLPTGKSWHAKAKDKDGNQFDGWIRESDGYPVKYEITQQGNALNLSFDKYNTGESITAPPASQVVQG