Scaffold Ga0193733_1053582

Overview

Basic Information

• Taxon OID: 3300020022
• Scaffold ID: Ga0193733_1053582
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1138
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016088	Metagenome / Metatranscriptome	250	Y
F057349	Metagenome / Metatranscriptome	136	Y
F083284	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193733_10535821	F057349	AGGAG	MQRRHLIRGAVLALAALSALAVTSAAPANSTATVTIRHQMRGCHSWSFNSGPFKASQSITLRAGTVLRFTNNDVMPHQLVQAAGPKMRLVHPKMIKMPSSATVKLTQRGLYRFTTKPGEDYAWAGSMKTVGEDNVLHLTVRVK
Ga0193733_10535822	F016088	AGAAG	MRRRSYAIWWNEDNGPKHVGKLEIAHPHAFLSGNGSTRLEVPLADITGVEYRRGEVRVDRRGRTALRIGSLDAPGTLLELAHSLES
Ga0193733_10535823	F083284	GGAG	MSAFIITRIHVGDYDRWRPMFEQDRPQARETAKVQRIFRDVDDPNHVFIFLEFESTEDAR