Scaffold Ga0193726_1012980

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1012980
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4414
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014543	Metagenome / Metatranscriptome	262	Y
F022713	Metagenome	213	Y
F029263	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_10129804	F029263	N/A	MQDSGSNAGRPPALEVSYAELRRARRAKLARPMRVRPSEPRDDHFEDLPTSVNASKHGIYFTSKKPNYYKGMRVFVTFPYTTAHDPMNSDYLAEVVRIDHMPNGKFGIAVDLKMTVNVAGSSKPGPRA
Ga0193726_10129806	F022713	GGCGG	MIMNMPKQPPILEDLRNHSQEELAELRVLLSVGAAMRPDPRRPGFFELSGIDRVYYIFKYPNGSKILLLGVWDRDPVAEIVSCACPAA
Ga0193726_10129807	F014543	GGAG	VPKTTKPAKRGKAPFNKDKRRRHHHFMVTVYYADGEKFGRVYTDKEKATRFADRQRRSPVVKSVRVGQVS