Scaffold Ga0193726_1005866

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1005866
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7183
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F013651	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_10058664	F013651	N/A	MHPQEIDLQKHASPDEMRARVANIQLQNDAKELAGLCASIPGDMDAIKQGLLSPAVLEKLKRVEKLSKHVREQLTRTTP
Ga0193726_10058665	F000151	GGAGG	MESAAARKSETDSKGLPGMGDPNVQIVVKTAEEELRLLIRERADIMKRIGTIKQTIFGLVKLFGPGILNEELPEFFATRPTDGQPGFTRACRLVLMEAGVPLAAREVCDQIQQRTPVIRHHKDPLASVTTVLNRLVEYGEARSVVRENGRRAWQWVSDQGESSPPHRE