Scaffold Ga0193726_1000702

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000702
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31979
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001177	Metagenome / Metatranscriptome	756	Y
F009625	Metagenome / Metatranscriptome	315	Y
F009744	Metagenome / Metatranscriptome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_100070216	F001177	AGGAGG	MAIKRPTKSRGSPSHKPVASAPLRHVDVRAPQKMVPGELYVGWLCKNRSCGLVIATAATAPGGKASTDFDDQLTAIKCPHCQDENLYRWSARSEQNYTPKSVSS
Ga0193726_10007023	F009744	GGAGG	MAIQDYVRSLAATETVSKSEVFRFLEMQFARADRNHDGELDADELAAFVQAVSRPDADQR
Ga0193726_10007025	F009625	GAG	MPLTPFELGKLKIVGHVREELDRAAIVAQSIRCVSGGIETPPGIARLLIIVNGTSETLDLKAHEVEACESIVVGETWHKIAALIGRFAG