Scaffold Ga0193726_1000068

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000068
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 186029
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (68.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000165	Metagenome / Metatranscriptome	1824	Y
F017051	Metagenome / Metatranscriptome	243	N
F025365	Metagenome / Metatranscriptome	202	Y
F085194	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_1000068118	F000165	GGA	MISTTKRAPVVQDLRNHSAEQIGELHLLLEQGAPVKPDPRRPGFFELQGLRNVFYIFKYPTGEKVMLLGVWERDPVAELVAYSCCHAA
Ga0193726_1000068155	F025365	GGAGG	MPKKTKPKAVSDGDTPLTPISMKERRELDKSIRKKYARSRRRYPEVHGKVVDFITHSIEDGTLYFTVRFKDKTDFSLRYACDMFAVGADFCDLKTGDFEMIREYMSRFRDRDWMLGGTASRS
Ga0193726_1000068156	F085194	N/A	MRGVERERKLEGKPPLVQFLTRSKRPKKITTKSEGHSSRKANGSPTPASGVKSVESEDAH
Ga0193726_1000068157	F017051	AGGA	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRAIINLQFMLEMRSWKKTMSRASTKNSTSGYPTSH