Scaffold Ga0193726_1000044

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000044
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 259075
• Total Scaffold Genes: 246
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 190 (77.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001678	Metagenome / Metatranscriptome	653	Y
F027575	Metagenome / Metatranscriptome	194	Y
F083081	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_1000044231	F001678	GGAGG	MRHIFVWVVEFIKLLGGRRLHPIATQCPICQQMVHLHVDKAGRRHVFAHARGLYEGSRFGVHYAAKMKCVGSGAQTMFDPRPDEHQSFKLPRSLLDES
Ga0193726_100004452	F083081	GGA	MAYQPSWNEDEPPKDRQVLALAFAKAIKSGSGNLVRVVAAWVESNQEWRPVRVGGDTIAGTDLDVICWAELPEIPDTVGRLKKATPSRPTQVYPRPK
Ga0193726_100004465	F027575	N/A	MIGAAALIAWMLIVRVDDLVKDGAKRRRLWRSTILDKIINANTVPFKRSRPLSGPSGRH