Scaffold Ga0193726

Basic Information
Taxon OID	3300020021 Open in IMG/M
Scaffold ID	Ga0193726_1000041 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020021 Open in IMG/M

Scaffold ID

Ga0193726_1000041 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	286399
Total Scaffold Genes	298 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	212 (71.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

286399

Total Scaffold Genes

298 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

212 (71.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9871	Long. (^o)	-107.0011	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9871

Long. (^o)

-107.0011

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000290	Metagenome / Metatranscriptome	1362	Y
F000386	Metagenome / Metatranscriptome	1203	Y
F000407	Metagenome / Metatranscriptome	1172	Y
F026062	Metagenome / Metatranscriptome	199	Y
F047183	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_1000041113	F000407	GGA	MLRLTTAWLCGAVVLAGCSGSGYAVRPVPRIAADTVGKPVSVLQEAFGEPRKVDKTSTKLVYVWFLPQKPKEGAPSGFQGCEMEVTVDARSQRVLGYSLSNIGWSTCGDVQRRIRVAQR
Ga0193726_1000041116	F000290	GAGG	MGYRDATLGVMSKSPNARRIGGPLSWDQLSRPDAEQCQRFLAESLSLLLGDVLRAILSDASPSVAADESAIERYRNLADSLADGESRRRTGLGLTRAGLAKRCVTWLKLLLTPAPNVPSTAAMREFVDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA
Ga0193726_1000041129	F000386	N/A	MTEMAPYSTLNVPPDEMVKYIQDLMTLPHGEIAAGSAMALAQRHWGGDTPLARAALLRWGALNLAFQDKRLESWTVTRERDRIQVPAALVAAAGIAPLVLDNERAVFDIPALLDATLEFQPPAGQA
Ga0193726_1000041142	F047183	GGAGG	MRGNMKAALILALPLLMIGTALGGEGVQVKITNDGTQDIVVTVYDMNANPRVILLRNARINGFTSVPVSAIADATGRANLSWTATSTDATSAKCGHDDTLALNNDSAVSVHADSSCSELAAGTG
Ga0193726_1000041150	F026062	N/A	MQYNEHQLAELAATVAAGLARGSDLLDFSSDREKIRASARELARVSLLIARHILVGAHAAALKVDELELLYDDADFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193726_1000041

Overview

Ecosystem & Geography

Associated Families

Sequences