Scaffold Ga0193726_1000015

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000015
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 570177
• Total Scaffold Genes: 492
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 363 (73.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002530	Metagenome / Metatranscriptome	551	Y
F025327	Metagenome / Metatranscriptome	202	Y
F025792	Metagenome / Metatranscriptome	200	Y
F037321	Metagenome / Metatranscriptome	168	Y
F038211	Metagenome / Metatranscriptome	166	Y
F050500	Metagenome / Metatranscriptome	145	Y
F066953	Metagenome / Metatranscriptome	126	Y
F083812	Metagenome / Metatranscriptome	112	Y
F092444	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_1000015124	F092444	GGA	MRAAFGTIVVAYFIAAPLLHAEEIVMSCTVEESGPSHARRMWELKFDQKNQLVYIAKTTSTAAITDSKISFRVDLGNGVPLSFAIDRMTGLIRVTGSAGSLYSGQCKVNDPSHPG
Ga0193726_1000015202	F002530	N/A	MSRDDEDRILHGLYYYRENIDEDMQVTSEQLLWLAMHPLREGEAWHKDGKLQSLDPSEFPEEIRGKLITAKLELPLRYLQYRRLITYARRSDGMLYAAVTFAGADRAIRLHTGRGRMDLWYREHRDGIAGVSITILISFITALITILVVNKILRF
Ga0193726_1000015210	F025792	N/A	MTAMKYRCLIAGALTGVCLLQSAFCAAQTPEQQKMWDAQRAQAQVDEKARTEKLAAQRAARKADPMAWVGTLNPLTTGGWQFRSVASDGSWASFSTEHQLKRSGHLVTAWLRQEYPEPQRSNNGNIYLSYVEKIQYDCAHEQARALLIIYYSENNITGSEESDATDVKQAVWVPIVPGTPGENIYQWACGSGKG
Ga0193726_1000015221	F037321	AGGAG	MGDIKADEDNVPIDKSGESTLRGAALDGAGQKKSVAHTAFEETRSPDTTLHLDDSEEDTLYDDGLELEDDSAGPLTGKDGRDDTQ
Ga0193726_100001525	F083812	AGGA	VSEQDDHSETIARYEPSGIEERHGIIPTWLAIVYAALLVWMVWYTIVFWTDKG
Ga0193726_100001528	F038211	GGAG	MMGPTFFRIIEITFAAYMMPALLVPPVWAAAWLLKRRFHLHTQPAIEVEGQFRILFWLFLIWFLLFLVVIAGASLNRGGGPAVALCWIIYALTNLLLAWFLLRFTATYGLIPDGLLADRVFMRFVAVVATQPLMTAAAFVVLNNVMGVAWNAQVPDLPAIQEGI
Ga0193726_1000015297	F066953	GAG	MNDSKPFDPADIDETLTRVVTHGGRTHLLFPFINGITAEARYNSIGMVIAGYAASVQDFQALTAMVRKAGEGAMWRILFNTPWLVRPSEDGGTAERKRRG
Ga0193726_1000015330	F050500	AGGAG	MTESQKLSALRDKLIRRRRALVEGIQASVGQLNGDDIVRVQNEIEAVERAMAEEKHAEFR
Ga0193726_1000015391	F025327	AGG	MNDDKSAPHFDRDLELDFIREFATGGESLMGLGVDGRRERIRVAIYRHKLAHMPFRDGRMTYAEAYAECYGWPLEMRRDVRHEAKSQPVIATKSPQKRLFRGS